PROTEIN CALC — PIPELINE

sequence-derived nitrogen factors · NIP reconciliation · two references · three surfaces
DATA SOURCES UniProt REST API verified sequences · reviewed entries USDA FoodData Central branded foods API · 200 products / cat AFCD Release 3 (FSANZ) Australian composition · nitrogen factors Supplier specs · lab values manual input (protein% · N · NPN) BUILD PIPELINE verify_accessions.py search · fetch · trim · chemistry accession_verification.json 136 verified proteins build_db.py curation · NPN · tiers · protein% protein_db.py 59 commodities · k · NPN profiles build_priors.py · build_afcd.py FDC + AFCD → priors.json (AU bands) ENGINE formulation.py mode B: forward calc mode A: allocation parser.py bracket-aware grammar priors.py band + weight lookup digestibility.py tier B coefficients 259 synonyms + 9 category priors SURFACES CLI --compare · --blend · --report · --label nip_form.html 2-mode form · JS engine port protein_db_demo.html compare · explore · calculator workbook .xlsx Block A factors · Block B blends talk demo The 6.25 Problem DOCUMENTATION README.md index · quick start · regeneration honesty section USE_CASE.md NIP use-case · user journey two sub-cases · decisions log CLASSIFICATION.md reliability tiers · sensitivity four failure modes TALK_OUTLINE.md · STANDARDS.md evidence · NPN stories · demo beats quality tiers · regulated comparison external database/build engine surface docs

Database

Engine

Priors